1 Response_reg#1
44-130 aa · 87 aa · 37.7% of protein
Raw token
Response_reg:44:0.0000000000000987:130:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB08_RS05630
Response regulator NarL family
Bifidobacterium breve · GCF_002838745
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838745#NRBB08_RS05630Stable P2CS identifier used across views.
GenomeGCF_002838745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 231 aa (62.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.7% of protein
Raw token
HTH_LUXR:168:0.00000000000000558:224:57:58- Raw architecture: Response_reg:44:0.0000000000000987:130:87:111#HTH_LUXR:168:0.00000000000000558:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838745::NZ_CP023192.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1263357-1264052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB08_1061RefSeq proteinWP_052790767.1
Context group ID
GCF_002838745::NZ_CP023192.1::G00008Context members
NRBB08_RS05630
Partner locus tags
NRBB08_RS05630
Partner old locus tags
NRBB08_1061
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052790767.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7CVX1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7CVX1_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB08_RS05630Primary locus identifier stored in the genes table.
Old locus tagNRBB08_1061Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP023192.1Sequence record reported by the local genomic context database.
Genomic interval1 263 357-1 264 052 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 263 357-1 264 052 ntGCF_002838745::NZ_CP023192.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838745::NZ_CP023192.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP023192.1All displayed genes belong to this local TCS context.
Neighborhood span1 263 357-1 264 052 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 263 357 nt1 264 052 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NRBB08_RS05630GCF_002838745#NRBB08_RS05630
RRNarLCurrent focus
1 263 357-1 264 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263855#BBM1114_RS08785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162454
Simplified PFAM architecture for RROC_1162454
PFAM domain coverage: 166 / 231 aa (71.9%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-129] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1162454
- Positioned domains: Response_reg 17-129 ; Response_reg 17-129 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_001263855#BBM1114_RS08785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838745
AssemblyASM283874v1 · Complete Genomehaploid
Genome composition2 289 759 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key