1 HAMP#1
142-211 aa · 70 aa · 17.1% of protein
Raw token
HAMP:142:0.0000000000198:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB27_RS02385
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838665
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838665#NRBB27_RS02385Stable P2CS identifier used across views.
GenomeGCF_002838665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 409 aa (46.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-300 aa · 65 aa · 15.9% of protein
Raw token
HisKA:236:0.0000000000189:300:65:643 HATPase_c#3
346-402 aa · 57 aa · 13.9% of protein
Raw token
HATPase_c:346:0.0000000196:402:60:109- Raw architecture: HAMP:142:0.0000000000198:211:70:69#HisKA:236:0.0000000000189:300:65:64#HATPase_c:346:0.0000000196:402:60:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838665::NZ_CP023196.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span555784-557674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB27_0459RefSeq proteinWP_198555030.1
Context group ID
GCF_002838665::NZ_CP023196.1::G00002Context members
NRBB27_RS02380NRBB27_RS02385
Partner locus tags
NRBB27_RS02380NRBB27_RS02385
Partner old locus tags
NRBB27_0458NRBB27_0459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198555030.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB27_RS02385Primary locus identifier stored in the genes table.
Old locus tagNRBB27_0459Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP023196.1Sequence record reported by the local genomic context database.
Genomic interval556 445-557 674 nt1 230 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span555 784-557 674 ntGCF_002838665::NZ_CP023196.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838665::NZ_CP023196.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP023196.1All displayed genes belong to this local TCS context.
Neighborhood span555 784-557 674 nt1 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
555 784 nt557 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB27_RS02380GCF_002838665#NRBB27_RS02380
RROmpR
555 784-556 455 nt · Forward (+)
NRBB27_RS02385GCF_002838665#NRBB27_RS02385
HKClassicCurrent focus
556 445-557 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838665#NRBB27_RS02385The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2363814
Simplified PFAM architecture for HKOC_2363814
PFAM domain coverage: 172 / 409 aa (42.1%)
1 aa409 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-210] | HisKA[237-300] | HATPase_c[347-404]
- Domain count: 3
- Matched identifier: HKOC_2363814
- Positioned domains: HAMP 161-210 ; HisKA 237-300 ; HATPase_c 347-404
Cluster members and taxonomy
Representative gene: GCF_002838665#NRBB27_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838665
AssemblyASM283866v1 · Complete Genomehaploid
Genome composition2 289 838 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key