1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000161:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CNCMI4321_RS09895
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838585
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838585#CNCMI4321_RS09895Stable P2CS identifier used across views.
GenomeGCF_002838585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:1.58e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000161:244:65:64#HATPase_c:308:1.58e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838585::NZ_CP021559.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2137806-2139924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCNCMI4321_1902RefSeq proteinWP_025332457.1
Context group ID
GCF_002838585::NZ_CP021559.1::G00012Context members
CNCMI4321_RS09890CNCMI4321_RS09895
Partner locus tags
CNCMI4321_RS09890CNCMI4321_RS09895
Partner old locus tags
CNCMI4321_1901CNCMI4321_1902
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025332457.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN1M5Q5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN1M5Q5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCNCMI4321_RS09895Primary locus identifier stored in the genes table.
Old locus tagCNCMI4321_1902Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021559.1Sequence record reported by the local genomic context database.
Genomic interval2 138 629-2 139 924 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 137 806-2 139 924 ntGCF_002838585::NZ_CP021559.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838585::NZ_CP021559.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021559.1All displayed genes belong to this local TCS context.
Neighborhood span2 137 806-2 139 924 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 137 806 nt2 139 924 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CNCMI4321_RS09890GCF_002838585#CNCMI4321_RS09890
RROmpR
2 137 806-2 138 510 nt · Reverse (-)
CNCMI4321_RS09895GCF_002838585#CNCMI4321_RS09895
HKClassicCurrent focus
2 138 629-2 139 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569055#B689B_RS08690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2161922
Simplified PFAM architecture for HKOC_2161922
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2161922
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_000569055#B689B_RS08690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838585
AssemblyASM283858v1 · Complete Genomehaploid
Genome composition2 464 852 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key