1 Response_reg#1
15-117 aa · 103 aa · 46.2% of protein
Raw token
Response_reg:15:0.0000000000366:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BB215W447A_RS00325
Response regulator NarL family
Bifidobacterium breve · GCF_002838485
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838485#BB215W447A_RS00325Stable P2CS identifier used across views.
GenomeGCF_002838485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 223 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-214 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:160:3.99e-16:214:55:58- Raw architecture: Response_reg:15:0.0000000000366:117:103:111#HTH_LUXR:160:3.99e-16:214:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838485::NZ_CP021558.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span86144-86815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBB215W447A_0069RefSeq proteinWP_106641229.1
Context group ID
GCF_002838485::NZ_CP021558.1::G00001Context members
BB215W447A_RS00325
Partner locus tags
BB215W447A_RS00325
Partner old locus tags
BB215W447A_0069
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_106641229.1Primary protein accession used for annex mappings.
UniProt accessionA0A2K9BI12Primary UniProt accession resolved in the annex database.
UniProt IDA0A2K9BI12_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBB215W447A_RS00325Primary locus identifier stored in the genes table.
Old locus tagBB215W447A_0069Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021558.1Sequence record reported by the local genomic context database.
Genomic interval86 144-86 815 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 144-86 815 ntGCF_002838485::NZ_CP021558.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838485::NZ_CP021558.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021558.1All displayed genes belong to this local TCS context.
Neighborhood span86 144-86 815 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 144 nt86 815 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BB215W447A_RS00325GCF_002838485#BB215W447A_RS00325
RRNarLCurrent focus
86 144-86 815 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838485#BB215W447A_RS00325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1598171
Simplified PFAM architecture for RROC_1598171
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-120] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1598171
- Positioned domains: Response_reg 15-120 ; Response_reg 15-120 ; GerE 162-214 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_002838485#BB215W447A_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838485
AssemblyASM283848v1 · Complete Genomehaploid
Genome composition2 589 602 bp · 59,5% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key