1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:3.44e-19:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BB017W439_RS03880
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838465
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838465#BB017W439_RS03880Stable P2CS identifier used across views.
GenomeGCF_002838465Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000285:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:3.04e-23:350:112:109- Raw architecture: HAMP:57:3.44e-19:127:71:69#HisKA:131:0.00000000000000285:195:65:64#HATPase_c:240:3.04e-23:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838465::NZ_CP021554.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span898063-899858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBB017W439_0740RefSeq proteinWP_014483891.1
Context group ID
GCF_002838465::NZ_CP021554.1::G00003Context members
BB017W439_RS03880BB017W439_RS03885
Partner locus tags
BB017W439_RS03880BB017W439_RS03885
Partner old locus tags
BB017W439_0740BB017W439_0741
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014483891.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B5K3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B5K3_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBB017W439_RS03880Primary locus identifier stored in the genes table.
Old locus tagBB017W439_0740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021554.1Sequence record reported by the local genomic context database.
Genomic interval898 063-899 136 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span898 063-899 858 ntGCF_002838465::NZ_CP021554.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838465::NZ_CP021554.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021554.1All displayed genes belong to this local TCS context.
Neighborhood span898 063-899 858 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
898 063 nt899 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BB017W439_RS03880GCF_002838465#BB017W439_RS03880
HKClassicCurrent focus
898 063-899 136 nt · Reverse (-)
BB017W439_RS03885GCF_002838465#BB017W439_RS03885
RROmpR
899 136-899 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS05385Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765108
Simplified PFAM architecture for HKOC_2765108
PFAM domain coverage: 230 / 357 aa (64.4%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[132-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765108
- Positioned domains: HAMP 73-126 ; HisKA 132-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS05385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838465
AssemblyASM283846v1 · Complete Genomehaploid
Genome composition2 301 422 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 8 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key