1 Response_reg#1
4-71 aa · 68 aa · 93.2% of protein
Raw token
Response_reg:4:0.00000000000000234:71:68:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB51_RS10920
Response regulator, CheY family
Bifidobacterium breve · GCF_002838405
ClassRRTypeCheYLength73 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838405#NRBB51_RS10920Stable P2CS identifier used across views.
GenomeGCF_002838405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length73 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage68 / 73 aa (93.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa73 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000000234:71:68:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838405::NZ_CP021392.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1804461-1804682Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB51_1534RefSeq proteinWP_198554001.1
Context group ID
GCF_002838405::NZ_CP021392.1::G00011Context members
NRBB51_RS10920
Partner locus tags
NRBB51_RS10920
Partner old locus tags
NRBB51_1534
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_198554001.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN1IBK0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN1IBK0_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB51_RS10920Primary locus identifier stored in the genes table.
Old locus tagNRBB51_1534Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021392.1Sequence record reported by the local genomic context database.
Genomic interval1 804 461-1 804 682 nt222 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 804 461-1 804 682 ntGCF_002838405::NZ_CP021392.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838405::NZ_CP021392.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021392.1All displayed genes belong to this local TCS context.
Neighborhood span1 804 461-1 804 682 nt222 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 804 461 nt1 804 682 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NRBB51_RS10920GCF_002838405#NRBB51_RS10920
RRCheYCurrent focus
1 804 461-1 804 682 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838405#NRBB51_RS10920The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477591
Simplified PFAM architecture for RROC_2477591
PFAM domain coverage: 62 / 73 aa (84.9%)
1 aa73 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-65]
- Domain count: 1
- Matched identifier: RROC_2477591
- Positioned domains: Response_reg 4-65 ; Response_reg 4-65
Cluster members and taxonomy
Representative gene: GCF_002838405#NRBB51_RS10920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838405
AssemblyASM283840v1 · Complete Genomehaploid
Genome composition2 402 272 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key