1 Response_reg#1
89-158 aa · 70 aa · 26.8% of protein
Raw token
Response_reg:89:3.53e-21:158:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB57_RS07620
Response regulator NarL family
Bifidobacterium breve · GCF_002838345
ClassRRTypeNarLLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838345#NRBB57_RS07620Stable P2CS identifier used across views.
GenomeGCF_002838345Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage125 / 261 aa (47.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
198-252 aa · 55 aa · 21.1% of protein
Raw token
HTH_LUXR:198:0.00000000000000176:252:56:58- Raw architecture: Response_reg:89:3.53e-21:158:70:111#HTH_LUXR:198:0.00000000000000176:252:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838345::NZ_CP021389.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1628910-1629695Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB57_1481RefSeq proteinWP_025299892.1
Context group ID
GCF_002838345::NZ_CP021389.1::G00007Context members
NRBB57_RS07620
Partner locus tags
NRBB57_RS07620
Partner old locus tags
NRBB57_1481
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025299892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB57_RS07620Primary locus identifier stored in the genes table.
Old locus tagNRBB57_1481Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021389.1Sequence record reported by the local genomic context database.
Genomic interval1 628 910-1 629 695 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 628 910-1 629 695 ntGCF_002838345::NZ_CP021389.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838345::NZ_CP021389.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021389.1All displayed genes belong to this local TCS context.
Neighborhood span1 628 910-1 629 695 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 628 910 nt1 629 695 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NRBB57_RS07620GCF_002838345#NRBB57_RS07620
RRNarLCurrent focus
1 628 910-1 629 695 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000568895#B2L_RS00475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648714
Simplified PFAM architecture for RROC_0648714
PFAM domain coverage: 121 / 261 aa (46.4%)
1 aa261 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[89-158] | GerE[199-249]
- Domain count: 2
- Matched identifier: RROC_0648714
- Positioned domains: Response_reg 89-158 ; Response_reg 89-158 ; GerE 199-249 ; GerE 199-249
Cluster members and taxonomy
Representative gene: GCF_000568895#B2L_RS00475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838345
AssemblyASM283834v1 · Complete Genomehaploid
Genome composition2 510 381 bp · 59,5% GCBifidobacterium breve
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key