1 Response_reg#1
11-121 aa · 111 aa · 54.1% of protein
Raw token
Response_reg:11:0.00000000000539:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB11_RS04895
Response regulator NarL family
Bifidobacterium breve · GCF_002838305
ClassRRTypeNarLLength205 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838305#NRBB11_RS04895Stable P2CS identifier used across views.
GenomeGCF_002838305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 205 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-196 aa · 53 aa · 25.9% of protein
Raw token
HTH_LUXR:144:3.34e-18:196:53:58- Raw architecture: Response_reg:11:0.00000000000539:121:113:111#HTH_LUXR:144:3.34e-18:196:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838305::NZ_CP021388.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1116633-1117250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB11_0922RefSeq proteinWP_161519288.1
Context group ID
GCF_002838305::NZ_CP021388.1::G00007Context members
NRBB11_RS04895
Partner locus tags
NRBB11_RS04895
Partner old locus tags
NRBB11_0922
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161519288.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB11_RS04895Primary locus identifier stored in the genes table.
Old locus tagNRBB11_0922Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021388.1Sequence record reported by the local genomic context database.
Genomic interval1 116 633-1 117 250 nt618 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 116 633-1 117 250 ntGCF_002838305::NZ_CP021388.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838305::NZ_CP021388.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021388.1All displayed genes belong to this local TCS context.
Neighborhood span1 116 633-1 117 250 nt618 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 116 633 nt1 117 250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NRBB11_RS04895GCF_002838305#NRBB11_RS04895
RRNarLCurrent focus
1 116 633-1 117 250 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838305#NRBB11_RS04895The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2092058
Simplified PFAM architecture for RROC_2092058
PFAM domain coverage: 164 / 205 aa (80.0%)
1 aa205 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-120] | GerE[145-197]
- Domain count: 2
- Matched identifier: RROC_2092058
- Positioned domains: Response_reg 10-120 ; Response_reg 10-120 ; GerE 145-197 ; GerE 145-197
Cluster members and taxonomy
Representative gene: GCF_002838305#NRBB11_RS04895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838305
AssemblyASM283830v1 · Complete Genomehaploid
Genome composition2 377 562 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 9 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key