1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:1.23e-29:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB11_RS04305
Response regulator NarL family
Bifidobacterium breve · GCF_002838305
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838305#NRBB11_RS04305Stable P2CS identifier used across views.
GenomeGCF_002838305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:2.46e-24:262:58:58- Raw architecture: Response_reg:9:1.23e-29:127:119:111#HTH_LUXR:205:2.46e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838305::NZ_CP021388.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span990510-993806Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB11_0806RefSeq proteinWP_032734837.1
Context group ID
GCF_002838305::NZ_CP021388.1::G00005Context members
NRBB11_RS04305NRBB11_RS04310
Partner locus tags
NRBB11_RS04305NRBB11_RS04310
Partner old locus tags
NRBB11_0806NRBB11_0807
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032734837.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB11_RS04305Primary locus identifier stored in the genes table.
Old locus tagNRBB11_0806Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021388.1Sequence record reported by the local genomic context database.
Genomic interval990 510-991 316 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span990 510-993 806 ntGCF_002838305::NZ_CP021388.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838305::NZ_CP021388.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021388.1All displayed genes belong to this local TCS context.
Neighborhood span990 510-993 806 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
990 510 nt993 806 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB11_RS04305GCF_002838305#NRBB11_RS04305
RRNarLCurrent focus
990 510-991 316 nt · Reverse (-)
NRBB11_RS04310GCF_002838305#NRBB11_RS04310
HKClassic
991 338-993 806 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000411435#HMPREF1482_RS00405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619558
Simplified PFAM architecture for RROC_0619558
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0619558
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 207-262 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_000411435#HMPREF1482_RS00405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838305
AssemblyASM283830v1 · Complete Genomehaploid
Genome composition2 377 562 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 9 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key