1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:1.11e-19:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1461_RS05255
Response regulator NarL family
Bifidobacterium longum · GCF_002833315
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002833315#APC1461_RS05255Stable P2CS identifier used across views.
GenomeGCF_002833315Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.000000000000142:192:52:58- Raw architecture: Response_reg:1:1.11e-19:110:111:111#HTH_LUXR:141:0.000000000000142:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002833315::NZ_PJEG01000011.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1322-1924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1461_0988RefSeq proteinWP_101027717.1
Context group ID
GCF_002833315::NZ_PJEG01000011.1::G00008Context members
APC1461_RS05255
Partner locus tags
APC1461_RS05255
Partner old locus tags
APC1461_0988
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101027717.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1461_RS05255Primary locus identifier stored in the genes table.
Old locus tagAPC1461_0988Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJEG01000011.1Sequence record reported by the local genomic context database.
Genomic interval1 322-1 924 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 322-1 924 ntGCF_002833315::NZ_PJEG01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833315::NZ_PJEG01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJEG01000011.1All displayed genes belong to this local TCS context.
Neighborhood span1 322-1 924 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 322 nt1 924 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
APC1461_RS05255GCF_002833315#APC1461_RS05255
RRNarLCurrent focus
1 322-1 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002833315#APC1461_RS05255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2136422
Simplified PFAM architecture for RROC_2136422
PFAM domain coverage: 159 / 200 aa (79.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-108] | GerE[141-192]
- Domain count: 2
- Matched identifier: RROC_2136422
- Positioned domains: Response_reg 2-108 ; Response_reg 2-108 ; GerE 141-192 ; GerE 141-192
Cluster members and taxonomy
Representative gene: GCF_002833315#APC1461_RS05255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833315
AssemblyASM283331v1 · Contighaploid
Genome composition2 418 994 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 9 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key