1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000102:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1476_RS08160
Histidine kinase, Classic
Bifidobacterium longum · GCF_002833265
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833265#APC1476_RS08160Stable P2CS identifier used across views.
GenomeGCF_002833265Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:2.9e-16:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:3.27e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000102:335:69:69#HisKA:347:2.9e-16:416:70:64#HATPase_c:480:3.27e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833265::NZ_PJDY01000016.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153659-156412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1476_1560RefSeq proteinWP_198546921.1
Context group ID
GCF_002833265::NZ_PJDY01000016.1::G00010Context members
APC1476_RS08160APC1476_RS08165
Partner locus tags
APC1476_RS08160APC1476_RS08165
Partner old locus tags
APC1476_1560APC1476_1561
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198546921.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1476_RS08160Primary locus identifier stored in the genes table.
Old locus tagAPC1476_1560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDY01000016.1Sequence record reported by the local genomic context database.
Genomic interval153 659-155 650 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span153 659-156 412 ntGCF_002833265::NZ_PJDY01000016.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833265::NZ_PJDY01000016.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDY01000016.1All displayed genes belong to this local TCS context.
Neighborhood span153 659-156 412 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 659 nt156 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1476_RS08160GCF_002833265#APC1476_RS08160
HKClassicCurrent focus
153 659-155 650 nt · Reverse (-)
APC1476_RS08165GCF_002833265#APC1476_RS08165
RROmpR
155 681-156 412 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002833265#APC1476_RS08160The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864771
Simplified PFAM architecture for HKOC_0864771
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0864771
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_002833265#APC1476_RS08160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833265
AssemblyASM283326v1 · Contighaploid
Genome composition2 532 540 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key