1 HisKA_3#1
245-303 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:245:0.0000000000000123:303:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1465_RS03855
Histidine kinase, Classic
Bifidobacterium longum · GCF_002833175
ClassHKTypeClassicLength798 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833175#APC1465_RS03855Stable P2CS identifier used across views.
GenomeGCF_002833175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length798 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 798 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
346-439 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:346:0.000000000000279:439:110:1093 HisKA_3#3
695-765 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:695:0.00000795:765:71:68- Raw architecture: HisKA_3:245:0.0000000000000123:303:59:68#HATPase_c:346:0.000000000000279:439:110:109#HisKA_3:695:0.00000795:765:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833175::NZ_PJED01000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43885-47246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1465_0723RefSeq proteinWP_100991022.1
Context group ID
GCF_002833175::NZ_PJED01000016.1::G00005Context members
APC1465_RS03850APC1465_RS03855
Partner locus tags
APC1465_RS03850APC1465_RS03855
Partner old locus tags
APC1465_0722APC1465_0723
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_100991022.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1465_RS03855Primary locus identifier stored in the genes table.
Old locus tagAPC1465_0723Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJED01000016.1Sequence record reported by the local genomic context database.
Genomic interval44 859-47 246 nt2 388 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 885-47 246 ntGCF_002833175::NZ_PJED01000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833175::NZ_PJED01000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJED01000016.1All displayed genes belong to this local TCS context.
Neighborhood span43 885-47 246 nt3 362 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 885 nt47 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1465_RS03850GCF_002833175#APC1465_RS03850
RRNarL
43 885-44 775 nt · Reverse (-)
APC1465_RS03855GCF_002833175#APC1465_RS03855
HKClassicCurrent focus
44 859-47 246 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002833175#APC1465_RS03855The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0559963
Simplified PFAM architecture for HKOC_0559963
PFAM domain coverage: 410 / 798 aa (51.4%)
1 aa798 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-139] | HisKA_3[245-306] | HATPase_c[346-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0559963
- Positioned domains: DUF7134 16-139 ; HisKA_3 245-306 ; HATPase_c 346-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_002833175#APC1465_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833175
AssemblyASM283317v1 · Contighaploid
Genome composition2 452 211 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key