1 HisKA_3#1
201-261 aa · 61 aa · 14.9% of protein
Raw token
HisKA_3:201:0.000000387:261:61:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1478_RS05435
Histidine kinase, Classic
Bifidobacterium longum · GCF_002833055
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833055#APC1478_RS05435Stable P2CS identifier used across views.
GenomeGCF_002833055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage132 / 410 aa (32.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000282:392:86:109- Raw architecture: HisKA_3:201:0.000000387:261:61:68#HATPase_c:322:0.0000282:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833055::NZ_PJDW01000007.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50084-52076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1478_1026RefSeq proteinWP_198545815.1
Context group ID
GCF_002833055::NZ_PJDW01000007.1::G00008Context members
APC1478_RS05435APC1478_RS05440
Partner locus tags
APC1478_RS05435APC1478_RS05440
Partner old locus tags
APC1478_1026APC1478_1027
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198545815.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1478_RS05435Primary locus identifier stored in the genes table.
Old locus tagAPC1478_1026Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDW01000007.1Sequence record reported by the local genomic context database.
Genomic interval50 084-51 316 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 084-52 076 ntGCF_002833055::NZ_PJDW01000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833055::NZ_PJDW01000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span50 084-52 076 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 084 nt52 076 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1478_RS05435GCF_002833055#APC1478_RS05435
HKClassicCurrent focus
50 084-51 316 nt · Forward (+)
APC1478_RS05440GCF_002833055#APC1478_RS05440
RRNarL
51 351-52 076 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002833055#APC1478_RS05435The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2355565
Simplified PFAM architecture for HKOC_2355565
PFAM domain coverage: 65 / 410 aa (15.9%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-264]
- Domain count: 1
- Matched identifier: HKOC_2355565
- Positioned domains: HisKA_3 200-264
Cluster members and taxonomy
Representative gene: GCF_002833055#APC1478_RS05435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833055
AssemblyASM283305v1 · Contighaploid
Genome composition2 223 352 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 10 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key