1 Response_reg#1
2-113 aa · 112 aa · 42.6% of protein
Raw token
Response_reg:2:2.83e-23:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1503_RS04080
Response regulator NarL family
Bifidobacterium longum · GCF_002832985
ClassRRTypeNarLLength263 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002832985#APC1503_RS04080Stable P2CS identifier used across views.
GenomeGCF_002832985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 263 aa (64.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
200-257 aa · 58 aa · 22.1% of protein
Raw token
HTH_LUXR:200:2.49e-25:257:58:58- Raw architecture: Response_reg:2:2.83e-23:113:112:111#HTH_LUXR:200:2.49e-25:257:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002832985::NZ_PJDT01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span378309-381680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1503_0753RefSeq proteinWP_332867624.1
Context group ID
GCF_002832985::NZ_PJDT01000011.1::G00005Context members
APC1503_RS04080APC1503_RS04085
Partner locus tags
APC1503_RS04080APC1503_RS04085
Partner old locus tags
APC1503_0753APC1503_0754
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332867624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1503_RS04080Primary locus identifier stored in the genes table.
Old locus tagAPC1503_0753Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDT01000011.1Sequence record reported by the local genomic context database.
Genomic interval378 309-379 100 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span378 309-381 680 ntGCF_002832985::NZ_PJDT01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002832985::NZ_PJDT01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDT01000011.1All displayed genes belong to this local TCS context.
Neighborhood span378 309-381 680 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
378 309 nt381 680 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1503_RS04080GCF_002832985#APC1503_RS04080
RRNarLCurrent focus
378 309-379 100 nt · Reverse (-)
APC1503_RS04085GCF_002832985#APC1503_RS04085
HKClassic
379 221-381 680 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002832985#APC1503_RS04080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0640424
Simplified PFAM architecture for RROC_0640424
PFAM domain coverage: 99 / 263 aa (37.6%)
1 aa263 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-44] | GerE[202-257]
- Domain count: 2
- Matched identifier: RROC_0640424
- Positioned domains: Response_reg 2-44 ; Response_reg 2-44 ; GerE 202-257 ; GerE 202-257
Cluster members and taxonomy
Representative gene: GCF_002832985#APC1503_RS04080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002832985
AssemblyASM283298v1 · Contighaploid
Genome composition2 562 703 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key