1 Response_reg#1
18-119 aa · 102 aa · 50.7% of protein
Raw token
Response_reg:18:0.0000000000164:119:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DPC6317_RS04995
Response regulator, unclassified
Bifidobacterium longum · GCF_002832945
ClassRRTypeunclassifiedLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002832945#DPC6317_RS04995Stable P2CS identifier used across views.
GenomeGCF_002832945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 201 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:18:0.0000000000164:119:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002832945::NZ_PJDQ01000007.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span308276-308881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDPC6317_0945RefSeq proteinWP_101010009.1
Context group ID
GCF_002832945::NZ_PJDQ01000007.1::G00008Context members
DPC6317_RS04995
Partner locus tags
DPC6317_RS04995
Partner old locus tags
DPC6317_0945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101010009.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A2SS18Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A2SS18_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDPC6317_RS04995Primary locus identifier stored in the genes table.
Old locus tagDPC6317_0945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval308 276-308 881 nt606 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span308 276-308 881 ntGCF_002832945::NZ_PJDQ01000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002832945::NZ_PJDQ01000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span308 276-308 881 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 276 nt308 881 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DPC6317_RS04995GCF_002832945#DPC6317_RS04995
RRunclassifiedCurrent focus
308 276-308 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002832955#APC1504_RS04675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1853173
Simplified PFAM architecture for RROC_1853173
PFAM domain coverage: 112 / 217 aa (51.6%)
1 aa217 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[34-145]
- Domain count: 1
- Matched identifier: RROC_1853173
- Positioned domains: Response_reg 34-145 ; Response_reg 34-145
Cluster members and taxonomy
Representative gene: GCF_002832955#APC1504_RS04675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002832945
AssemblyASM283294v1 · Contighaploid
Genome composition2 448 630 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key