1 HisKA_3#1
92-156 aa · 65 aa · 20.0% of protein
Raw token
HisKA_3:92:0.0000000000000312:156:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE153_RS03815
Histidine kinase, Classic
Bifidobacterium sp. N4G05 · GCF_002742445
ClassHKTypeClassicLength325 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002742445#CE153_RS03815Stable P2CS identifier used across views.
GenomeGCF_002742445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length325 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 325 aa (53.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa325 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-311 aa · 110 aa · 33.8% of protein
Raw token
HATPase_c:202:0.00000000787:311:111:109- Raw architecture: HisKA_3:92:0.0000000000000312:156:65:68#HATPase_c:202:0.00000000787:311:111:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002742445::NZ_NJNQ01000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136609-138590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE153_03785RefSeq proteinWP_099595169.1
Context group ID
GCF_002742445::NZ_NJNQ01000003.1::G00006Context members
CE153_RS03810CE153_RS03815
Partner locus tags
CE153_RS03810CE153_RS03815
Partner old locus tags
CE153_03780CE153_03785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099595169.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE153_RS03815Primary locus identifier stored in the genes table.
Old locus tagCE153_03785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNQ01000003.1Sequence record reported by the local genomic context database.
Genomic interval137 268-138 590 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 609-138 590 ntGCF_002742445::NZ_NJNQ01000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002742445::NZ_NJNQ01000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNQ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span136 609-138 590 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 609 nt138 590 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE153_RS03810GCF_002742445#CE153_RS03810
RRNarL
136 609-137 271 nt · Reverse (-)
CE153_RS03815GCF_002742445#CE153_RS03815
HKClassicCurrent focus
137 268-138 590 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742445#CE153_RS03815The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2864119
Simplified PFAM architecture for HKOC_2864119
PFAM domain coverage: 66 / 325 aa (20.3%)
1 aa325 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[92-157]
- Domain count: 1
- Matched identifier: HKOC_2864119
- Positioned domains: HisKA_3 92-157
Cluster members and taxonomy
Representative gene: GCF_002742445#CE153_RS03815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 013 020 · GCF_002742445
AssemblyASM274244v1 · Contighaploid
Genome composition2 069 141 bp · 56,0% GCBifidobacterium sp. N4G05
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key