1 Response_reg#1
2-106 aa · 105 aa · 51.0% of protein
Raw token
Response_reg:2:7.87e-22:106:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE168_RS04145
Response regulator, unclassified
Bifidobacterium sp. N5G01 · GCF_002742425
ClassRRTypeunclassifiedLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002742425#CE168_RS04145Stable P2CS identifier used across views.
GenomeGCF_002742425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 206 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 GerE#2
152-201 aa · 50 aa · 24.3% of protein
Raw token
GerE:152:0.000000000277:201:50:57- Raw architecture: Response_reg:2:7.87e-22:106:105:111#GerE:152:0.000000000277:201:50:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002742425::NZ_NJNP01000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span115802-116422Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE168_04125RefSeq proteinWP_099571249.1
Context group ID
GCF_002742425::NZ_NJNP01000002.1::G00008Context members
CE168_RS04145
Partner locus tags
CE168_RS04145
Partner old locus tags
CE168_04125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099571249.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE168_RS04145Primary locus identifier stored in the genes table.
Old locus tagCE168_04125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNP01000002.1Sequence record reported by the local genomic context database.
Genomic interval115 802-116 422 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 802-116 422 ntGCF_002742425::NZ_NJNP01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002742425::NZ_NJNP01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span115 802-116 422 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 802 nt116 422 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE168_RS04145GCF_002742425#CE168_RS04145
RRunclassifiedCurrent focus
115 802-116 422 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS04145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2082849
Simplified PFAM architecture for RROC_2082849
PFAM domain coverage: 149 / 206 aa (72.3%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-105] | GerE[156-200]
- Domain count: 2
- Matched identifier: RROC_2082849
- Positioned domains: Response_reg 2-105 ; Response_reg 2-105 ; GerE 156-200 ; GerE 156-200
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS04145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 013 021 · GCF_002742425
AssemblyASM274242v1 · Contighaploid
Genome composition2 121 628 bp · 56,0% GCBifidobacterium sp. N5G01
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key