1 HisKA#1
113-171 aa · 59 aa · 17.8% of protein
Raw token
HisKA:113:0.0000245:171:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS23795
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002580025
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS23795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 331 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-322 aa · 102 aa · 30.8% of protein
Raw token
HATPase_c:221:5.61e-16:322:106:109- Raw architecture: HisKA:113:0.0000245:171:59:64#HATPase_c:221:5.61e-16:322:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000038.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43442-45126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_23795RefSeq proteinWP_098953972.1
Context group ID
GCF_002580025::NZ_NURF01000038.1::G00039Context members
COE92_RS23790COE92_RS23795
Partner locus tags
COE92_RS23790COE92_RS23795
Partner old locus tags
COE92_23790COE92_23795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098953972.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS23795Primary locus identifier stored in the genes table.
Old locus tagCOE92_23795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000038.1Sequence record reported by the local genomic context database.
Genomic interval44 131-45 126 nt996 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 442-45 126 ntGCF_002580025::NZ_NURF01000038.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000038.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000038.1All displayed genes belong to this local TCS context.
Neighborhood span43 442-45 126 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 442 nt45 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS23790GCF_002580025#COE92_RS23790
RROmpR
43 442-44 134 nt · Forward (+)
COE92_RS23795GCF_002580025#COE92_RS23795
HKClassicCurrent focus
44 131-45 126 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002580025#COE92_RS23795The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2855516
Simplified PFAM architecture for HKOC_2855516
PFAM domain coverage: 103 / 331 aa (31.1%)
1 aa331 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-323]
- Domain count: 1
- Matched identifier: HKOC_2855516
- Positioned domains: HATPase_c 221-323
Cluster members and taxonomy
Representative gene: GCF_002580025#COE92_RS23795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key