1 sCache_like#1
35-149 aa · 115 aa · 19.6% of protein
Raw token
sCache_like:35:2.57e-26:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS19820
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002580025
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS19820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 587 aa (80.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.00000000000791:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000257:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.6% of protein
Raw token
HisKA:360:1.39e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:1.02e-35:581:110:109- Raw architecture: sCache_like:35:2.57e-26:149:117:114#HAMP:165:0.00000000000791:234:70:69#PAS:245:0.0000000000000257:351:112:113#HisKA:360:1.39e-21:427:68:64#HATPase_c:472:1.02e-35:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000026.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100798-103273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_19820RefSeq proteinWP_001032123.1
Context group ID
GCF_002580025::NZ_NURF01000026.1::G00024Context members
COE92_RS19815COE92_RS19820
Partner locus tags
COE92_RS19815COE92_RS19820
Partner old locus tags
COE92_19815COE92_19820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001032123.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5SIV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5SIV0_9BACIDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS19820Primary locus identifier stored in the genes table.
Old locus tagCOE92_19820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000026.1Sequence record reported by the local genomic context database.
Genomic interval101 510-103 273 nt1 764 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 798-103 273 ntGCF_002580025::NZ_NURF01000026.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000026.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000026.1All displayed genes belong to this local TCS context.
Neighborhood span100 798-103 273 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 798 nt103 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS19815GCF_002580025#COE92_RS19815
RROmpR
100 798-101 517 nt · Forward (+)
COE92_RS19820GCF_002580025#COE92_RS19820
HKClassicCurrent focus
101 510-103 273 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002557205#CN554_RS06430Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1038026
Simplified PFAM architecture for HKOC_1038026
PFAM domain coverage: 449 / 603 aa (74.5%)
1 aa603 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1038026
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_002557205#CN554_RS06430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key