1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:6.93e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS16545
Response regulator OmpR family
Bacillus wiedmannii · GCF_002580025
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS16545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-221 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:149:2.36e-27:221:74:77- Raw architecture: Response_reg:5:6.93e-39:114:111:111#Trans_reg_C:149:2.36e-27:221:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000020.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133231-134978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_16545RefSeq proteinWP_002108509.1
Context group ID
GCF_002580025::NZ_NURF01000020.1::G00021Context members
COE92_RS16540COE92_RS16545
Partner locus tags
COE92_RS16540COE92_RS16545
Partner old locus tags
COE92_16540COE92_16545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002108509.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G6PAH6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G6PAH6_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS16545Primary locus identifier stored in the genes table.
Old locus tagCOE92_16545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000020.1Sequence record reported by the local genomic context database.
Genomic interval134 301-134 978 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 231-134 978 ntGCF_002580025::NZ_NURF01000020.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000020.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000020.1All displayed genes belong to this local TCS context.
Neighborhood span133 231-134 978 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 231 nt134 978 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS16540GCF_002580025#COE92_RS16540
HKClassic
133 231-134 304 nt · Reverse (-)
COE92_RS16545GCF_002580025#COE92_RS16545
RROmpRCurrent focus
134 301-134 978 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS15985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1464752
Simplified PFAM architecture for RROC_1464752
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1464752
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS15985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key