1 HAMP#1
50-129 aa · 80 aa · 22.4% of protein
Raw token
HAMP:50:0.0000000243:129:80:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS16540
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002580025
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS16540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 357 aa (72.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000665:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:1.99e-32:352:110:109- Raw architecture: HAMP:50:0.0000000243:129:80:69#HisKA:133:0.0000000000000665:199:67:64#HATPase_c:243:1.99e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000020.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133231-134978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_16540RefSeq proteinWP_001231636.1
Context group ID
GCF_002580025::NZ_NURF01000020.1::G00021Context members
COE92_RS16540COE92_RS16545
Partner locus tags
COE92_RS16540COE92_RS16545
Partner old locus tags
COE92_16540COE92_16545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001231636.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G6P8U1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G6P8U1_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS16540Primary locus identifier stored in the genes table.
Old locus tagCOE92_16540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000020.1Sequence record reported by the local genomic context database.
Genomic interval133 231-134 304 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 231-134 978 ntGCF_002580025::NZ_NURF01000020.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000020.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000020.1All displayed genes belong to this local TCS context.
Neighborhood span133 231-134 978 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 231 nt134 978 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS16540GCF_002580025#COE92_RS16540
HKClassicCurrent focus
133 231-134 304 nt · Reverse (-)
COE92_RS16545GCF_002580025#COE92_RS16545
RROmpR
134 301-134 978 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS15980Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765167
Simplified PFAM architecture for HKOC_2765167
PFAM domain coverage: 176 / 357 aa (49.3%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2765167
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS15980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key