1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:1.91e-23:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS10025
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002580025
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS10025Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 376 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-367 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:282:0.0000000000123:367:104:109- Raw architecture: HisKA_3:178:1.91e-23:241:64:68#HATPase_c:282:0.0000000000123:367:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000013.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6029-7758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_10025RefSeq proteinWP_098953662.1
Context group ID
GCF_002580025::NZ_NURF01000013.1::G00005Context members
COE92_RS10025COE92_RS10030
Partner locus tags
COE92_RS10025COE92_RS10030
Partner old locus tags
COE92_10025COE92_10030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098953662.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS10025Primary locus identifier stored in the genes table.
Old locus tagCOE92_10025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000013.1Sequence record reported by the local genomic context database.
Genomic interval6 029-7 159 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 029-7 758 ntGCF_002580025::NZ_NURF01000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000013.1All displayed genes belong to this local TCS context.
Neighborhood span6 029-7 758 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 029 nt7 758 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS10025GCF_002580025#COE92_RS10025
HKClassicCurrent focus
6 029-7 159 nt · Forward (+)
COE92_RS10030GCF_002580025#COE92_RS10030
RRNarL
7 156-7 758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002580025#COE92_RS10025The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2642942
Simplified PFAM architecture for HKOC_2642942
PFAM domain coverage: 280 / 376 aa (74.5%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-148] | HisKA_3[178-241] | HATPase_c[280-350]
- Domain count: 3
- Matched identifier: HKOC_2642942
- Positioned domains: DesK_N 4-148 ; HisKA_3 178-241 ; HATPase_c 280-350
Cluster members and taxonomy
Representative gene: GCF_002580025#COE92_RS10025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key