1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000676:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE92_RS03850
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002580025
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002580025#COE92_RS03850Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 458 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000323:303:61:643 HATPase_c#3
349-453 aa · 105 aa · 22.9% of protein
Raw token
HATPase_c:349:1.12e-17:453:111:109- Raw architecture: HAMP:165:0.00000000000000676:232:68:69#HisKA:244:0.00000000000323:303:61:64#HATPase_c:349:1.12e-17:453:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002580025::NZ_NURF01000006.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span128366-130382Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE92_03850RefSeq proteinWP_098705493.1
Context group ID
GCF_002580025::NZ_NURF01000006.1::G00060Context members
COE92_RS03845COE92_RS03850
Partner locus tags
COE92_RS03845COE92_RS03850
Partner old locus tags
COE92_03845COE92_03850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098705493.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE92_RS03850Primary locus identifier stored in the genes table.
Old locus tagCOE92_03850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURF01000006.1Sequence record reported by the local genomic context database.
Genomic interval129 006-130 382 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 366-130 382 ntGCF_002580025::NZ_NURF01000006.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002580025::NZ_NURF01000006.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURF01000006.1All displayed genes belong to this local TCS context.
Neighborhood span128 366-130 382 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 366 nt130 382 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE92_RS03845GCF_002580025#COE92_RS03845
RROmpR
128 366-129 013 nt · Forward (+)
COE92_RS03850GCF_002580025#COE92_RS03850
HKClassicCurrent focus
129 006-130 382 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002571525#COM23_RS21535Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861728
Simplified PFAM architecture for HKOC_1861728
PFAM domain coverage: 206 / 458 aa (45.0%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-445]
- Domain count: 3
- Matched identifier: HKOC_1861728
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-445
Cluster members and taxonomy
Representative gene: GCF_002571525#COM23_RS21535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002580025
AssemblyASM258002v1 · Contighaploid
Genome composition5 364 003 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key