1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:1.5e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COD19_RS00115
Response regulator OmpR family
Bacillus cereus · GCF_002577745
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002577745#COD19_RS00115Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 231 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:1.14e-30:229:74:77- Raw architecture: Response_reg:5:1.5e-38:114:111:111#Trans_reg_C:156:1.14e-30:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002577745::NZ_NUMG01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16658-18500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOD19_00115RefSeq proteinWP_088229145.1
Context group ID
GCF_002577745::NZ_NUMG01000001.1::G00015Context members
COD19_RS00110COD19_RS00115
Partner locus tags
COD19_RS00110COD19_RS00115
Partner old locus tags
COD19_00110COD19_00115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088229145.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C1MBT2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C1MBT2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOD19_RS00115Primary locus identifier stored in the genes table.
Old locus tagCOD19_00115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUMG01000001.1Sequence record reported by the local genomic context database.
Genomic interval17 805-18 500 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 658-18 500 ntGCF_002577745::NZ_NUMG01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002577745::NZ_NUMG01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUMG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span16 658-18 500 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 658 nt18 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COD19_RS00110GCF_002577745#COD19_RS00110
HKClassic
16 658-17 815 nt · Reverse (-)
COD19_RS00115GCF_002577745#COD19_RS00115
RROmpRCurrent focus
17 805-18 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002196815#B6F67_RS00225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1165535
Simplified PFAM architecture for RROC_1165535
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1165535
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_002196815#B6F67_RS00225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002577745
AssemblyASM257774v1 · Scaffoldhaploid
Genome composition5 486 552 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key