1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.0000000000198:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN984_RS08115
Histidine kinase, Classic
Bacillus cereus · GCF_002576595
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002576595#CN984_RS08115Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 355 aa (67.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.00000000000162:191:62:643 HATPase_c#3
242-349 aa · 108 aa · 30.4% of protein
Raw token
HATPase_c:242:8.37e-22:349:109:109- Raw architecture: HAMP:50:0.0000000000198:119:70:69#HisKA:130:0.00000000000162:191:62:64#HATPase_c:242:8.37e-22:349:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002576595::NZ_NUIL01000006.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span395889-397644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN984_08115RefSeq proteinWP_142344271.1
Context group ID
GCF_002576595::NZ_NUIL01000006.1::G00060Context members
CN984_RS08115CN984_RS08120
Partner locus tags
CN984_RS08115CN984_RS08120
Partner old locus tags
CN984_08115CN984_08120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142344271.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN984_RS08115Primary locus identifier stored in the genes table.
Old locus tagCN984_08115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUIL01000006.1Sequence record reported by the local genomic context database.
Genomic interval395 889-396 956 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span395 889-397 644 ntGCF_002576595::NZ_NUIL01000006.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002576595::NZ_NUIL01000006.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUIL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span395 889-397 644 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
395 889 nt397 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN984_RS08115GCF_002576595#CN984_RS08115
HKClassicCurrent focus
395 889-396 956 nt · Reverse (-)
CN984_RS08120GCF_002576595#CN984_RS08120
RROmpR
396 946-397 644 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002576595#CN984_RS08115The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775919
Simplified PFAM architecture for HKOC_2775919
PFAM domain coverage: 223 / 355 aa (62.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[244-350]
- Domain count: 3
- Matched identifier: HKOC_2775919
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 244-350
Cluster members and taxonomy
Representative gene: GCF_002576595#CN984_RS08115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002576595
AssemblyASM257659v1 · Scaffoldhaploid
Genome composition5 676 727 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 136 · HK 71 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key