1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.0000019:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN984_RS05720
Histidine kinase, Classic
Bacillus cereus · GCF_002576595
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002576595#CN984_RS05720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.0000000000033:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:1.49e-26:364:113:109- Raw architecture: HAMP:63:0.0000019:130:68:69#HisKA:141:0.0000000000033:208:68:64#HATPase_c:253:1.49e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002576595::NZ_NUIL01000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157414-159211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN984_05720RefSeq proteinWP_098763541.1
Context group ID
GCF_002576595::NZ_NUIL01000004.1::G00040Context members
CN984_RS05720CN984_RS05725
Partner locus tags
CN984_RS05720CN984_RS05725
Partner old locus tags
CN984_05720CN984_05725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098763541.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B9QEK6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B9QEK6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN984_RS05720Primary locus identifier stored in the genes table.
Old locus tagCN984_05720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUIL01000004.1Sequence record reported by the local genomic context database.
Genomic interval157 414-158 520 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 414-159 211 ntGCF_002576595::NZ_NUIL01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002576595::NZ_NUIL01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUIL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span157 414-159 211 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 414 nt159 211 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN984_RS05720GCF_002576595#CN984_RS05720
HKClassicCurrent focus
157 414-158 520 nt · Reverse (-)
CN984_RS05725GCF_002576595#CN984_RS05725
RROmpR
158 513-159 211 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002576595#CN984_RS05720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2699392
Simplified PFAM architecture for HKOC_2699392
PFAM domain coverage: 177 / 368 aa (48.1%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[142-207] | HATPase_c[253-363]
- Domain count: 2
- Matched identifier: HKOC_2699392
- Positioned domains: HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_002576595#CN984_RS05720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002576595
AssemblyASM257659v1 · Scaffoldhaploid
Genome composition5 676 727 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 136 · HK 71 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key