1 HAMP#1
58-126 aa · 69 aa · 19.1% of protein
Raw token
HAMP:58:0.00000000000155:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN958_RS01720
Histidine kinase, Classic
Bacillus cereus · GCF_002575205
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002575205#CN958_RS01720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 361 aa (66.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 17.2% of protein
Raw token
HisKA:138:0.00000000000359:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.9% of protein
Raw token
HATPase_c:251:8.44e-23:358:109:109- Raw architecture: HAMP:58:0.00000000000155:126:69:69#HisKA:138:0.00000000000359:199:62:64#HATPase_c:251:8.44e-23:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002575205::NZ_NUHO01000009.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22740-24489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN958_01720RefSeq proteinWP_142344552.1
Context group ID
GCF_002575205::NZ_NUHO01000009.1::G00046Context members
CN958_RS01720CN958_RS01725
Partner locus tags
CN958_RS01720CN958_RS01725
Partner old locus tags
CN958_01720CN958_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142344552.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN958_RS01720Primary locus identifier stored in the genes table.
Old locus tagCN958_01720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUHO01000009.1Sequence record reported by the local genomic context database.
Genomic interval22 740-23 825 nt1 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 740-24 489 ntGCF_002575205::NZ_NUHO01000009.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002575205::NZ_NUHO01000009.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUHO01000009.1All displayed genes belong to this local TCS context.
Neighborhood span22 740-24 489 nt1 750 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 740 nt24 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN958_RS01720GCF_002575205#CN958_RS01720
HKClassicCurrent focus
22 740-23 825 nt · Reverse (-)
CN958_RS01725GCF_002575205#CN958_RS01725
RROmpR
23 791-24 489 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002575205#CN958_RS01720The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2741843
Simplified PFAM architecture for HKOC_2741843
PFAM domain coverage: 223 / 361 aa (61.8%)
1 aa361 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-126] | HisKA[138-200] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2741843
- Positioned domains: HAMP 75-126 ; HisKA 138-200 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_002575205#CN958_RS01720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002575205
AssemblyASM257520v1 · Scaffoldhaploid
Genome composition6 124 909 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 128 · HK 70 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key