1 HAMP#1
55-122 aa · 68 aa · 20.5% of protein
Raw token
HAMP:55:0.000000303:122:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS19675
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002571525#COM23_RS19675Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 331 aa (61.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.3% of protein
Raw token
HisKA:137:0.0000000226:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.8% of protein
Raw token
HATPase_c:246:0.0000000000237:327:103:109- Raw architecture: HAMP:55:0.000000303:122:68:69#HisKA:137:0.0000000226:190:54:64#HATPase_c:246:0.0000000000237:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002571525::NZ_NVIF01000029.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73140-74803Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_19675RefSeq proteinWP_098209093.1
Context group ID
GCF_002571525::NZ_NVIF01000029.1::G00043Context members
COM23_RS19670COM23_RS19675
Partner locus tags
COM23_RS19670COM23_RS19675
Partner old locus tags
COM23_19670COM23_19675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098209093.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS19675Primary locus identifier stored in the genes table.
Old locus tagCOM23_19675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000029.1Sequence record reported by the local genomic context database.
Genomic interval73 808-74 803 nt996 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 140-74 803 ntGCF_002571525::NZ_NVIF01000029.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000029.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000029.1All displayed genes belong to this local TCS context.
Neighborhood span73 140-74 803 nt1 664 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 140 nt74 803 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM23_RS19670GCF_002571525#COM23_RS19670
RROmpR
73 140-73 811 nt · Forward (+)
COM23_RS19675GCF_002571525#COM23_RS19675
HKClassicCurrent focus
73 808-74 803 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002557475#CN573_RS21955Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2855485
Simplified PFAM architecture for HKOC_2855485
PFAM domain coverage: 134 / 331 aa (40.5%)
1 aa331 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-326]
- Domain count: 2
- Matched identifier: HKOC_2855485
- Positioned domains: HisKA 137-190 ; HATPase_c 247-326
Cluster members and taxonomy
Representative gene: GCF_002557475#CN573_RS21955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key