1 PAS_4#1
234-310 aa · 77 aa · 9.6% of protein
Raw token
PAS_4:234:0.000000673:310:81:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS11060
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002571525#COM23_RS11060Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage435 / 801 aa (54.3%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:1.57e-19:437:107:1103 PAS_9#3
480-569 aa · 90 aa · 11.2% of protein
Raw token
PAS_9:480:0.00000000438:569:92:1024 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.000000000000788:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:1.33e-26:795:104:109- Raw architecture: PAS_4:234:0.000000673:310:81:110#PAS_4:332:1.57e-19:437:107:110#PAS_9:480:0.00000000438:569:92:102#HisKA:587:0.000000000000788:647:61:64#HATPase_c:695:1.33e-26:795:104:109
- Domain description: 2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002571525::NZ_NVIF01000017.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24915-27320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_11060RefSeq proteinWP_098208945.1
Context group ID
GCF_002571525::NZ_NVIF01000017.1::G00020Context members
COM23_RS11060
Partner locus tags
COM23_RS11060
Partner old locus tags
COM23_11060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098208945.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS11060Primary locus identifier stored in the genes table.
Old locus tagCOM23_11060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000017.1Sequence record reported by the local genomic context database.
Genomic interval24 915-27 320 nt2 406 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 915-27 320 ntGCF_002571525::NZ_NVIF01000017.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000017.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000017.1All displayed genes belong to this local TCS context.
Neighborhood span24 915-27 320 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 915 nt27 320 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COM23_RS11060GCF_002571525#COM23_RS11060
HKClassicCurrent focus
24 915-27 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002557475#CN573_RS15210Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554664
Simplified PFAM architecture for HKOC_0554664
PFAM domain coverage: 447 / 801 aa (55.8%)
1 aa801 aa
PAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[230-310] | PAS_4[331-437] | PAS_9[474-569] | HisKA[587-646] | HATPase_c[694-796]
- Domain count: 5
- Matched identifier: HKOC_0554664
- Positioned domains: PAS_4 230-310 ; PAS_4 331-437 ; PAS_9 474-569 ; HisKA 587-646 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_002557475#CN573_RS15210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key