1 HisKA#1
113-171 aa · 59 aa · 17.8% of protein
Raw token
HisKA:113:0.0000146:171:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS08705
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002571525#COM23_RS08705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 331 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-322 aa · 102 aa · 30.8% of protein
Raw token
HATPase_c:221:5.3e-16:322:106:109- Raw architecture: HisKA:113:0.0000146:171:59:64#HATPase_c:221:5.3e-16:322:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002571525::NZ_NVIF01000013.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174186-175870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_08705RefSeq proteinWP_098705081.1
Context group ID
GCF_002571525::NZ_NVIF01000013.1::G00014Context members
COM23_RS08705COM23_RS08710
Partner locus tags
COM23_RS08705COM23_RS08710
Partner old locus tags
COM23_08705COM23_08710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098705081.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS08705Primary locus identifier stored in the genes table.
Old locus tagCOM23_08705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000013.1Sequence record reported by the local genomic context database.
Genomic interval174 186-175 181 nt996 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span174 186-175 870 ntGCF_002571525::NZ_NVIF01000013.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000013.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000013.1All displayed genes belong to this local TCS context.
Neighborhood span174 186-175 870 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 186 nt175 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM23_RS08705GCF_002571525#COM23_RS08705
HKClassicCurrent focus
174 186-175 181 nt · Reverse (-)
COM23_RS08710GCF_002571525#COM23_RS08710
RROmpR
175 178-175 870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002571525#COM23_RS08705The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2855506
Simplified PFAM architecture for HKOC_2855506
PFAM domain coverage: 103 / 331 aa (31.1%)
1 aa331 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-323]
- Domain count: 1
- Matched identifier: HKOC_2855506
- Positioned domains: HATPase_c 221-323
Cluster members and taxonomy
Representative gene: GCF_002571525#COM23_RS08705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key