1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.0000000000775:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS05725
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002571525#COM23_RS05725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 487 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000665:330:66:643 HATPase_c#3
377-487 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:377:1.38e-32:487:111:109- Raw architecture: HAMP:192:0.0000000000775:259:70:69#HisKA:265:0.0000000000000665:330:66:64#HATPase_c:377:1.38e-32:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002571525::NZ_NVIF01000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50333-52533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_05725RefSeq proteinWP_097994387.1
Context group ID
GCF_002571525::NZ_NVIF01000011.1::G00007Context members
COM23_RS05725COM23_RS05730
Partner locus tags
COM23_RS05725COM23_RS05730
Partner old locus tags
COM23_05725COM23_05730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097994387.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD6TUI6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD6TUI6_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS05725Primary locus identifier stored in the genes table.
Old locus tagCOM23_05725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000011.1Sequence record reported by the local genomic context database.
Genomic interval50 333-51 796 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 333-52 533 ntGCF_002571525::NZ_NVIF01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000011.1All displayed genes belong to this local TCS context.
Neighborhood span50 333-52 533 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 333 nt52 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM23_RS05725GCF_002571525#COM23_RS05725
HKClassicCurrent focus
50 333-51 796 nt · Reverse (-)
COM23_RS05730GCF_002571525#COM23_RS05730
RROmpR
51 862-52 533 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002551545#CON92_RS16610Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1560876
Simplified PFAM architecture for HKOC_1560876
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1560876
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_002551545#CON92_RS16610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key