1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000471:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS05070
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002571525#COM23_RS05070Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 328 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-324 aa · 110 aa · 33.5% of protein
Raw token
HATPase_c:215:1.66e-27:324:110:109- Raw architecture: HisKA:117:0.000000471:169:59:64#HATPase_c:215:1.66e-27:324:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002571525::NZ_NVIF01000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span121542-123232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_05070RefSeq proteinWP_000765319.1
Context group ID
GCF_002571525::NZ_NVIF01000010.1::G00002Context members
COM23_RS05070COM23_RS05075
Partner locus tags
COM23_RS05070COM23_RS05075
Partner old locus tags
COM23_05070COM23_05075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000765319.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G6IEJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G6IEJ5_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS05070Primary locus identifier stored in the genes table.
Old locus tagCOM23_05070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000010.1Sequence record reported by the local genomic context database.
Genomic interval121 542-122 528 nt987 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 542-123 232 ntGCF_002571525::NZ_NVIF01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000010.1All displayed genes belong to this local TCS context.
Neighborhood span121 542-123 232 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 542 nt123 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM23_RS05070GCF_002571525#COM23_RS05070
HKClassicCurrent focus
121 542-122 528 nt · Reverse (-)
COM23_RS05075GCF_002571525#COM23_RS05075
RROmpR
122 528-123 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS12885Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2859557
Simplified PFAM architecture for HKOC_2859557
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2859557
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS12885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key