1 HAMP#1
63-130 aa · 68 aa · 18.6% of protein
Raw token
HAMP:63:0.000000194:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM23_RS02370
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002571525
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002571525#COM23_RS02370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 365 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.6% of protein
Raw token
HisKA:141:0.000000000000385:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.7% of protein
Raw token
HATPase_c:253:1.8e-26:364:113:109- Raw architecture: HAMP:63:0.000000194:130:68:69#HisKA:141:0.000000000000385:208:68:64#HATPase_c:253:1.8e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002571525::NZ_NVIF01000004.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29872-31660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM23_02370RefSeq proteinWP_098085185.1
Context group ID
GCF_002571525::NZ_NVIF01000004.1::G00058Context members
COM23_RS02365COM23_RS02370
Partner locus tags
COM23_RS02365COM23_RS02370
Partner old locus tags
COM23_02365COM23_02370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098085185.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD6TI35Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD6TI35_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM23_RS02370Primary locus identifier stored in the genes table.
Old locus tagCOM23_02370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVIF01000004.1Sequence record reported by the local genomic context database.
Genomic interval30 563-31 660 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 872-31 660 ntGCF_002571525::NZ_NVIF01000004.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002571525::NZ_NVIF01000004.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVIF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span29 872-31 660 nt1 789 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 872 nt31 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM23_RS02365GCF_002571525#COM23_RS02365
RROmpR
29 872-30 570 nt · Forward (+)
COM23_RS02370GCF_002571525#COM23_RS02370
HKClassicCurrent focus
30 563-31 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555085#CN607_RS17205Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719613
Simplified PFAM architecture for HKOC_2719613
PFAM domain coverage: 221 / 365 aa (60.5%)
1 aa365 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[86-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2719613
- Positioned domains: HAMP 86-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_002555085#CN607_RS17205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002571525
AssemblyASM257152v1 · Scaffoldhaploid
Genome composition5 452 746 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key