1 HisKA_3#1
184-247 aa · 64 aa · 10.8% of protein
Raw token
HisKA_3:184:0.00000000000000132:247:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS09905
Histidine kinase, Hybrid
Bacillus mycoides · GCF_002569385
ClassHKTypeHybridLength595 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002569385#COL41_RS09905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage319 / 595 aa (53.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
289-376 aa · 88 aa · 14.8% of protein
Raw token
HATPase_c:289:0.00000000000012:376:106:1093 Response_reg#3
386-497 aa · 112 aa · 18.8% of protein
Raw token
Response_reg:386:2.17e-30:497:112:1114 HTH_LUXR#4
534-588 aa · 55 aa · 9.2% of protein
Raw token
HTH_LUXR:534:3.69e-18:588:55:58- Raw architecture: HisKA_3:184:0.00000000000000132:247:66:68#HATPase_c:289:0.00000000000012:376:106:109#Response_reg:386:2.17e-30:497:112:111#HTH_LUXR:534:3.69e-18:588:55:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002569385::NZ_NVFI01000014.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span37273-39060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_09915RefSeq proteinWP_002084561.1
Context group ID
GCF_002569385::NZ_NVFI01000014.1::G00004Context members
COL41_RS09905
Partner locus tags
COL41_RS09905
Partner old locus tags
COL41_09915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002084561.1Primary protein accession used for annex mappings.
UniProt accessionR8HXA9Primary UniProt accession resolved in the annex database.
UniProt IDR8HXA9_BACCEDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS09905Primary locus identifier stored in the genes table.
Old locus tagCOL41_09915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000014.1Sequence record reported by the local genomic context database.
Genomic interval37 273-39 060 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 273-39 060 ntGCF_002569385::NZ_NVFI01000014.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000014.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000014.1All displayed genes belong to this local TCS context.
Neighborhood span37 273-39 060 nt1 788 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 273 nt39 060 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL41_RS09905GCF_002569385#COL41_RS09905
HKHybridCurrent focus
37 273-39 060 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS16840Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1079805
Simplified PFAM architecture for HKOC_1079805
PFAM domain coverage: 316 / 595 aa (53.1%)
1 aa595 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[184-247] | HATPase_c[290-375] | Response_reg[386-496] | GerE[534-588]
- Domain count: 4
- Matched identifier: HKOC_1079805
- Positioned domains: HisKA_3 184-247 ; HATPase_c 290-375 ; Response_reg 386-496 ; GerE 534-588
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS16840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key