1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:3.59e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS05475
Response regulator OmpR family
Bacillus mycoides · GCF_002569385
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569385#COL41_RS05475Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.42e-32:227:77:77- Raw architecture: Response_reg:4:3.59e-35:113:111:111#Trans_reg_C:151:1.42e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569385::NZ_NVFI01000007.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16430-18575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_05480RefSeq proteinWP_002034338.1
Context group ID
GCF_002569385::NZ_NVFI01000007.1::G00067Context members
COL41_RS05470COL41_RS05475
Partner locus tags
COL41_RS05470COL41_RS05475
Partner old locus tags
COL41_05475COL41_05480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002034338.1Primary protein accession used for annex mappings.
UniProt accessionA0A150C3Z0Primary UniProt accession resolved in the annex database.
UniProt IDA0A150C3Z0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS05475Primary locus identifier stored in the genes table.
Old locus tagCOL41_05480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000007.1Sequence record reported by the local genomic context database.
Genomic interval17 886-18 575 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 430-18 575 ntGCF_002569385::NZ_NVFI01000007.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000007.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000007.1All displayed genes belong to this local TCS context.
Neighborhood span16 430-18 575 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 430 nt18 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL41_RS05470GCF_002569385#COL41_RS05470
HKClassic
16 430-17 884 nt · Forward (+)
COL41_RS05475GCF_002569385#COL41_RS05475
RROmpRCurrent focus
17 886-18 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS25845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249242
Simplified PFAM architecture for RROC_1249242
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1249242
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS25845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key