1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.000000000089:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS05080
Histidine kinase, Classic
Bacillus mycoides · GCF_002569385
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569385#COL41_RS05080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 487 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000708:330:66:643 HATPase_c#3
377-486 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:377:1.42e-32:486:110:109- Raw architecture: HAMP:192:0.000000000089:259:70:69#HisKA:265:0.0000000000000708:330:66:64#HATPase_c:377:1.42e-32:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569385::NZ_NVFI01000006.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156522-158734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_05085RefSeq proteinWP_016101854.1
Context group ID
GCF_002569385::NZ_NVFI01000006.1::G00063Context members
COL41_RS05075COL41_RS05080
Partner locus tags
COL41_RS05075COL41_RS05080
Partner old locus tags
COL41_05080COL41_05085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016101854.1Primary protein accession used for annex mappings.
UniProt accessionR8HPE1Primary UniProt accession resolved in the annex database.
UniProt IDR8HPE1_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS05080Primary locus identifier stored in the genes table.
Old locus tagCOL41_05085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000006.1Sequence record reported by the local genomic context database.
Genomic interval157 271-158 734 nt1 464 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 522-158 734 ntGCF_002569385::NZ_NVFI01000006.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000006.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span156 522-158 734 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 522 nt158 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL41_RS05075GCF_002569385#COL41_RS05075
RROmpR
156 522-157 193 nt · Forward (+)
COL41_RS05080GCF_002569385#COL41_RS05080
HKClassicCurrent focus
157 271-158 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS14975Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1559720
Simplified PFAM architecture for HKOC_1559720
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1559720
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS14975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key