1 HisKA#1
253-319 aa · 67 aa · 14.1% of protein
Raw token
HisKA:253:0.00000000148:319:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS03100
Histidine kinase, Classic
Bacillus mycoides · GCF_002569385
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569385#COL41_RS03100Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 475 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
364-474 aa · 111 aa · 23.4% of protein
Raw token
HATPase_c:364:3.68e-21:474:112:109- Raw architecture: HisKA:253:0.00000000148:319:67:64#HATPase_c:364:3.68e-21:474:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569385::NZ_NVFI01000005.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5820-7890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_03100RefSeq proteinWP_098635115.1
Context group ID
GCF_002569385::NZ_NVFI01000005.1::G00057Context members
COL41_RS03095COL41_RS03100
Partner locus tags
COL41_RS03095COL41_RS03100
Partner old locus tags
COL41_03095COL41_03100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098635115.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS03100Primary locus identifier stored in the genes table.
Old locus tagCOL41_03100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000005.1Sequence record reported by the local genomic context database.
Genomic interval6 463-7 890 nt1 428 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 820-7 890 ntGCF_002569385::NZ_NVFI01000005.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000005.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span5 820-7 890 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 820 nt7 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL41_RS03095GCF_002569385#COL41_RS03095
RROmpR
5 820-6 485 nt · Forward (+)
COL41_RS03100GCF_002569385#COL41_RS03100
HKClassicCurrent focus
6 463-7 890 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569385#COL41_RS03100The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1666343
Simplified PFAM architecture for HKOC_1666343
PFAM domain coverage: 174 / 475 aa (36.6%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[254-318] | HATPase_c[365-473]
- Domain count: 2
- Matched identifier: HKOC_1666343
- Positioned domains: HisKA 254-318 ; HATPase_c 365-473
Cluster members and taxonomy
Representative gene: GCF_002569385#COL41_RS03100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key