1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:6.91e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS00850
Response regulator NarL family
Bacillus mycoides · GCF_002569385
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569385#COL41_RS00850Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:2.34e-24:205:55:58- Raw architecture: Response_reg:6:6.91e-37:116:111:111#HTH_LUXR:151:2.34e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569385::NZ_NVFI01000002.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74438-76185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_00850RefSeq proteinWP_098634961.1
Context group ID
GCF_002569385::NZ_NVFI01000002.1::G00039Context members
COL41_RS00845COL41_RS00850
Partner locus tags
COL41_RS00845COL41_RS00850
Partner old locus tags
COL41_00845COL41_00850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098634961.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS00850Primary locus identifier stored in the genes table.
Old locus tagCOL41_00850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000002.1Sequence record reported by the local genomic context database.
Genomic interval75 550-76 185 nt636 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 438-76 185 ntGCF_002569385::NZ_NVFI01000002.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000002.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span74 438-76 185 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 438 nt76 185 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL41_RS00845GCF_002569385#COL41_RS00845
HKClassic
74 438-75 535 nt · Forward (+)
COL41_RS00850GCF_002569385#COL41_RS00850
RRNarLCurrent focus
75 550-76 185 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569385#COL41_RS00850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2006485
Simplified PFAM architecture for RROC_2006485
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2006485
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_002569385#COL41_RS00850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key