1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:4.48e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL71_RS28590
Response regulator OmpR family
Bacillus mycoides · GCF_002568935
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002568935#COL71_RS28590Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:7.84e-37:229:77:77- Raw architecture: Response_reg:6:4.48e-35:115:111:111#Trans_reg_C:153:7.84e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002568935::NZ_NVGU01000039.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13122-15312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL71_28595RefSeq proteinWP_002029454.1
Context group ID
GCF_002568935::NZ_NVGU01000039.1::G00039Context members
COL71_RS28590COL71_RS28595
Partner locus tags
COL71_RS28590COL71_RS28595
Partner old locus tags
COL71_28595COL71_28600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002029454.1Primary protein accession used for annex mappings.
UniProt accessionR8GWQ4Primary UniProt accession resolved in the annex database.
UniProt IDR8GWQ4_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL71_RS28590Primary locus identifier stored in the genes table.
Old locus tagCOL71_28595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGU01000039.1Sequence record reported by the local genomic context database.
Genomic interval13 122-13 823 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 122-15 312 ntGCF_002568935::NZ_NVGU01000039.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002568935::NZ_NVGU01000039.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGU01000039.1All displayed genes belong to this local TCS context.
Neighborhood span13 122-15 312 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 122 nt15 312 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL71_RS28590GCF_002568935#COL71_RS28590
RROmpRCurrent focus
13 122-13 823 nt · Forward (+)
COL71_RS28595GCF_002568935#COL71_RS28595
HKClassic
13 807-15 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS01335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080337
Simplified PFAM architecture for RROC_1080337
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080337
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS01335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002568935
AssemblyASM256893v1 · Scaffoldhaploid
Genome composition5 633 378 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key