1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000563:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL71_RS11980
Histidine kinase, Classic
Bacillus mycoides · GCF_002568935
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002568935#COL71_RS11980Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 472 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:1.91e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:4.21e-27:470:109:109- Raw architecture: HAMP:171:0.000000000563:241:71:69#HisKA:245:1.91e-16:312:68:64#HATPase_c:362:4.21e-27:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002568935::NZ_NVGU01000006.1::G00078
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span410494-412583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL71_11985RefSeq proteinWP_098632559.1
Context group ID
GCF_002568935::NZ_NVGU01000006.1::G00078Context members
COL71_RS11975COL71_RS11980
Partner locus tags
COL71_RS11975COL71_RS11980
Partner old locus tags
COL71_11980COL71_11985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098632559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL71_RS11980Primary locus identifier stored in the genes table.
Old locus tagCOL71_11985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGU01000006.1Sequence record reported by the local genomic context database.
Genomic interval411 165-412 583 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span410 494-412 583 ntGCF_002568935::NZ_NVGU01000006.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002568935::NZ_NVGU01000006.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGU01000006.1All displayed genes belong to this local TCS context.
Neighborhood span410 494-412 583 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
410 494 nt412 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL71_RS11975GCF_002568935#COL71_RS11975
RROmpR
410 494-411 168 nt · Forward (+)
COL71_RS11980GCF_002568935#COL71_RS11980
HKClassicCurrent focus
411 165-412 583 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002568935#COL71_RS11980The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1698620
Simplified PFAM architecture for HKOC_1698620
PFAM domain coverage: 353 / 472 aa (74.8%)
1 aa472 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1698620
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_002568935#COL71_RS11980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002568935
AssemblyASM256893v1 · Scaffoldhaploid
Genome composition5 633 378 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key