1 Response_reg#1
7-116 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:7:6.71e-39:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL71_RS02045
Response regulator OmpR family
Bacillus mycoides · GCF_002568935
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002568935#COL71_RS02045Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.02e-34:233:78:77- Raw architecture: Response_reg:7:6.71e-39:116:111:111#Trans_reg_C:156:2.02e-34:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002568935::NZ_NVGU01000003.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80610-83101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL71_02050RefSeq proteinWP_098632072.1
Context group ID
GCF_002568935::NZ_NVGU01000003.1::G00043Context members
COL71_RS02045COL71_RS02050
Partner locus tags
COL71_RS02045COL71_RS02050
Partner old locus tags
COL71_02050COL71_02055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098632072.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL71_RS02045Primary locus identifier stored in the genes table.
Old locus tagCOL71_02050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGU01000003.1Sequence record reported by the local genomic context database.
Genomic interval80 610-81 326 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 610-83 101 ntGCF_002568935::NZ_NVGU01000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002568935::NZ_NVGU01000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span80 610-83 101 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 610 nt83 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL71_RS02045GCF_002568935#COL71_RS02045
RROmpRCurrent focus
80 610-81 326 nt · Forward (+)
COL71_RS02050GCF_002568935#COL71_RS02050
HKClassic
81 326-83 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002568935#COL71_RS02045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0938788
Simplified PFAM architecture for RROC_0938788
PFAM domain coverage: 187 / 238 aa (78.6%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0938788
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_002568935#COL71_RS02045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002568935
AssemblyASM256893v1 · Scaffoldhaploid
Genome composition5 633 378 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key