1 PAS_9#1
92-183 aa · 92 aa · 21.9% of protein
Raw token
PAS_9:92:0.0000000000153:183:98:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL71_RS01955
Histidine kinase, Classic
Bacillus mycoides · GCF_002568935
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002568935#COL71_RS01955Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 421 aa (60.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
198-257 aa · 60 aa · 14.3% of protein
Raw token
HisKA:198:0.0000000000245:257:60:643 HATPase_c#3
307-409 aa · 103 aa · 24.5% of protein
Raw token
HATPase_c:307:2.51e-26:409:107:109- Raw architecture: PAS_9:92:0.0000000000153:183:98:102#HisKA:198:0.0000000000245:257:60:64#HATPase_c:307:2.51e-26:409:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002568935::NZ_NVGU01000003.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span61427-62692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL71_01960RefSeq proteinWP_002168800.1
Context group ID
GCF_002568935::NZ_NVGU01000003.1::G00041Context members
COL71_RS01955
Partner locus tags
COL71_RS01955
Partner old locus tags
COL71_01960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002168800.1Primary protein accession used for annex mappings.
UniProt accessionR8N6T1Primary UniProt accession resolved in the annex database.
UniProt IDR8N6T1_BACCXDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL71_RS01955Primary locus identifier stored in the genes table.
Old locus tagCOL71_01960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGU01000003.1Sequence record reported by the local genomic context database.
Genomic interval61 427-62 692 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 427-62 692 ntGCF_002568935::NZ_NVGU01000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002568935::NZ_NVGU01000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span61 427-62 692 nt1 266 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 427 nt62 692 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL71_RS01955GCF_002568935#COL71_RS01955
HKClassicCurrent focus
61 427-62 692 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS06065Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2256643
Simplified PFAM architecture for HKOC_2256643
PFAM domain coverage: 253 / 421 aa (60.1%)
1 aa421 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[95-182] | HisKA[198-258] | HATPase_c[307-410]
- Domain count: 3
- Matched identifier: HKOC_2256643
- Positioned domains: PAS_9 95-182 ; HisKA 198-258 ; HATPase_c 307-410
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS06065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002568935
AssemblyASM256893v1 · Scaffoldhaploid
Genome composition5 633 378 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key