1 HAMP#1
199-268 aa · 70 aa · 13.8% of protein
Raw token
HAMP:199:0.0000000000000239:268:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ30_RS15390
Histidine kinase, Classic
Bacillus anthracis · GCF_002566425
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566425#COJ30_RS15390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKA_3HATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 507 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
281-348 aa · 68 aa · 13.4% of protein
Raw token
HisKA_3:281:5.71e-18:348:68:683 HATPase_c#3
387-471 aa · 85 aa · 16.8% of protein
Raw token
HATPase_c:387:0.0000000000000233:471:101:109- Raw architecture: HAMP:199:0.0000000000000239:268:70:69#HisKA_3:281:5.71e-18:348:68:68#HATPase_c:387:0.0000000000000233:471:101:109
- Domain description: 1 HAMP,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566425::NZ_NUXH01000059.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17224-19384Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ30_15395RefSeq proteinWP_098556123.1
Context group ID
GCF_002566425::NZ_NUXH01000059.1::G00048Context members
COJ30_RS15385COJ30_RS15390
Partner locus tags
COJ30_RS15385COJ30_RS15390
Partner old locus tags
COJ30_15390COJ30_15395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098556123.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XLV4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XLV4_BACANDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ30_RS15390Primary locus identifier stored in the genes table.
Old locus tagCOJ30_15395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUXH01000059.1Sequence record reported by the local genomic context database.
Genomic interval17 861-19 384 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 224-19 384 ntGCF_002566425::NZ_NUXH01000059.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566425::NZ_NUXH01000059.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUXH01000059.1All displayed genes belong to this local TCS context.
Neighborhood span17 224-19 384 nt2 161 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 224 nt19 384 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ30_RS15385GCF_002566425#COJ30_RS15385
RRNarL
17 224-17 898 nt · Reverse (-)
COJ30_RS15390GCF_002566425#COJ30_RS15390
HKClassicCurrent focus
17 861-19 384 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002566425#COJ30_RS15390The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1441131
Simplified PFAM architecture for HKOC_1441131
PFAM domain coverage: 205 / 507 aa (40.4%)
1 aa507 aa
HAMPHisKA_3HATPase_c
- Simplified architecture: HAMP + HisKA_3 + HATPase_c
- Raw architecture: HAMP[217-267] | HisKA_3[281-347] | HATPase_c[388-474]
- Domain count: 3
- Matched identifier: HKOC_1441131
- Positioned domains: HAMP 217-267 ; HisKA_3 281-347 ; HATPase_c 388-474
Cluster members and taxonomy
Representative gene: GCF_002566425#COJ30_RS15390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 392 · GCF_002566425
AssemblyASM256642v1 · Scaffoldhaploid
Genome composition5 915 630 bp · 35,0% GCBacillus anthracis
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key