1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.00000000288:414:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ17_RS10340
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002565435
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002565435#COJ17_RS10340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 580 aa (29.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-579 aa · 109 aa · 18.8% of protein
Raw token
HATPase_c:471:2.81e-30:579:109:109- Raw architecture: HisKA:356:0.00000000288:414:60:64#HATPase_c:471:2.81e-30:579:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002565435::NZ_NUWL01000004.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span672085-674541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ17_10345RefSeq proteinWP_061660112.1
Context group ID
GCF_002565435::NZ_NUWL01000004.1::G00059Context members
COJ17_RS10335COJ17_RS10340
Partner locus tags
COJ17_RS10335COJ17_RS10340
Partner old locus tags
COJ17_10340COJ17_10345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_061660112.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36VEQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36VEQ3_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ17_RS10340Primary locus identifier stored in the genes table.
Old locus tagCOJ17_10345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUWL01000004.1Sequence record reported by the local genomic context database.
Genomic interval672 799-674 541 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span672 085-674 541 ntGCF_002565435::NZ_NUWL01000004.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002565435::NZ_NUWL01000004.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUWL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span672 085-674 541 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
672 085 nt674 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ17_RS10335GCF_002565435#COJ17_RS10335
RROmpR
672 085-672 789 nt · Forward (+)
COJ17_RS10340GCF_002565435#COJ17_RS10340
HKClassicCurrent focus
672 799-674 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583685#AT266_RS06600Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1162383
Simplified PFAM architecture for HKOC_1162383
PFAM domain coverage: 168 / 580 aa (29.0%)
1 aa580 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-579]
- Domain count: 2
- Matched identifier: HKOC_1162383
- Positioned domains: HisKA 356-414 ; HATPase_c 471-579
Cluster members and taxonomy
Representative gene: GCF_001583685#AT266_RS06600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002565435
AssemblyASM256543v1 · Scaffoldhaploid
Genome composition5 691 959 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 113 · HK 61 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key