1 PAS_9#1
340-445 aa · 106 aa · 12.9% of protein
Raw token
PAS_9:340:0.00000000000069:445:106:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ07_RS08030
Histidine kinase, Classic
Bacillus cereus · GCF_002564815
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002564815#COJ07_RS08030Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_4HisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage383 / 820 aa (46.7%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation4 items
2 PAS_4#2
472-581 aa · 110 aa · 13.4% of protein
Raw token
PAS_4:472:0.00000000037:581:112:1103 HisKA#3
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000808:659:62:644 HATPase_c#4
706-810 aa · 105 aa · 12.8% of protein
Raw token
HATPase_c:706:1.1e-24:810:108:109- Raw architecture: PAS_9:340:0.00000000000069:445:106:102#PAS_4:472:0.00000000037:581:112:110#HisKA:598:0.0000000000000808:659:62:64#HATPase_c:706:1.1e-24:810:108:109
- Domain description: 1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002564815::NZ_NUXC01000013.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1117-3579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ07_08030RefSeq proteinWP_098499062.1
Context group ID
GCF_002564815::NZ_NUXC01000013.1::G00006Context members
COJ07_RS08030
Partner locus tags
COJ07_RS08030
Partner old locus tags
COJ07_08030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098499062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ07_RS08030Primary locus identifier stored in the genes table.
Old locus tagCOJ07_08030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUXC01000013.1Sequence record reported by the local genomic context database.
Genomic interval1 117-3 579 nt2 463 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 117-3 579 ntGCF_002564815::NZ_NUXC01000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564815::NZ_NUXC01000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUXC01000013.1All displayed genes belong to this local TCS context.
Neighborhood span1 117-3 579 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 117 nt3 579 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COJ07_RS08030GCF_002564815#COJ07_RS08030
HKClassicCurrent focus
1 117-3 579 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002564815#COJ07_RS08030The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529891
Simplified PFAM architecture for HKOC_0529891
PFAM domain coverage: 501 / 820 aa (61.1%)
1 aa820 aa
5TM-5TMR_LYTPAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[21-144] | PAS_4[336-448] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[705-808]
- Domain count: 5
- Matched identifier: HKOC_0529891
- Positioned domains: 5TM-5TMR_LYT 21-144 ; PAS_4 336-448 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 705-808
Cluster members and taxonomy
Representative gene: GCF_002564815#COJ07_RS08030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002564815
AssemblyASM256481v1 · Scaffoldhaploid
Genome composition5 798 897 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key