1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:8.87e-28:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN444_RS02890
Response regulator, unclassified
Bacillus thuringiensis · GCF_002562295
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002562295#CN444_RS02890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 230 aa (67.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_11#2
171-212 aa · 42 aa · 18.3% of protein
Raw token
HTH_11:171:0.0000492:212:43:52- Raw architecture: Response_reg:7:8.87e-28:119:113:111#HTH_11:171:0.0000492:212:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002562295::NZ_NTWN01000002.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29288-29980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN444_02890RefSeq proteinWP_000503468.1
Context group ID
GCF_002562295::NZ_NTWN01000002.1::G00036Context members
CN444_RS02890
Partner locus tags
CN444_RS02890
Partner old locus tags
CN444_02890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000503468.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HJS5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HJS5_BACTIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN444_RS02890Primary locus identifier stored in the genes table.
Old locus tagCN444_02890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTWN01000002.1Sequence record reported by the local genomic context database.
Genomic interval29 288-29 980 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 288-29 980 ntGCF_002562295::NZ_NTWN01000002.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002562295::NZ_NTWN01000002.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTWN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span29 288-29 980 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 288 nt29 980 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CN444_RS02890GCF_002562295#CN444_RS02890
RRunclassifiedCurrent focus
29 288-29 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS02730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199883
Simplified PFAM architecture for RROC_1199883
PFAM domain coverage: 160 / 230 aa (69.6%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[179-226]
- Domain count: 2
- Matched identifier: RROC_1199883
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HTH_64 179-226 ; HTH_64 179-226
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS02730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002562295
AssemblyASM256229v1 · Scaffoldhaploid
Genome composition5 785 051 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key