1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:1.13e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN404_RS10340
Response regulator OmpR family
Bacillus thuringiensis · GCF_002562035
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002562035#CN404_RS10340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:147:7.59e-28:221:76:77- Raw architecture: Response_reg:5:1.13e-37:114:111:111#Trans_reg_C:147:7.59e-28:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002562035::NZ_NTVB01000052.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39768-41515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN404_10340RefSeq proteinWP_002153076.1
Context group ID
GCF_002562035::NZ_NTVB01000052.1::G00048Context members
CN404_RS10335CN404_RS10340
Partner locus tags
CN404_RS10335CN404_RS10340
Partner old locus tags
CN404_10335CN404_10340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002153076.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN404_RS10340Primary locus identifier stored in the genes table.
Old locus tagCN404_10340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTVB01000052.1Sequence record reported by the local genomic context database.
Genomic interval40 838-41 515 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 768-41 515 ntGCF_002562035::NZ_NTVB01000052.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002562035::NZ_NTVB01000052.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTVB01000052.1All displayed genes belong to this local TCS context.
Neighborhood span39 768-41 515 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 768 nt41 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN404_RS10335GCF_002562035#CN404_RS10335
HKClassic
39 768-40 841 nt · Reverse (-)
CN404_RS10340GCF_002562035#CN404_RS10340
RROmpRCurrent focus
40 838-41 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293725#IGE_RS18580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1464806
Simplified PFAM architecture for RROC_1464806
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1464806
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_000293725#IGE_RS18580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002562035
AssemblyASM256203v1 · Scaffoldhaploid
Genome composition5 828 945 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 107 · HK 58 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key