1 HisKA#1
160-226 aa · 67 aa · 18.9% of protein
Raw token
HisKA:160:0.0000000000000457:226:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN312_RS11290
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002560695
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002560695#CN312_RS11290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 354 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
273-354 aa · 82 aa · 23.2% of protein
Raw token
HATPase_c:273:6.3e-17:354:82:109- Raw architecture: HisKA:160:0.0000000000000457:226:67:64#HATPase_c:273:6.3e-17:354:82:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002560695::NZ_NTRU01000041.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1746Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN312_11295RefSeq proteinWP_078386651.1
Context group ID
GCF_002560695::NZ_NTRU01000041.1::G00041Context members
CN312_RS11290CN312_RS11295
Partner locus tags
CN312_RS11290CN312_RS11295
Partner old locus tags
CN312_11295CN312_11300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078386651.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN312_RS11290Primary locus identifier stored in the genes table.
Old locus tagCN312_11295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTRU01000041.1Sequence record reported by the local genomic context database.
Genomic interval1-1 061 nt1 061 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 746 ntGCF_002560695::NZ_NTRU01000041.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002560695::NZ_NTRU01000041.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTRU01000041.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 746 nt1 746 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 746 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN312_RS11290GCF_002560695#CN312_RS11290
HKClassicCurrent focus
1-1 061 nt · Reverse (-)
CN312_RS11295GCF_002560695#CN312_RS11295
RROmpR
1 051-1 746 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS12500Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565000
Simplified PFAM architecture for HKOC_2565000
PFAM domain coverage: 174 / 385 aa (45.2%)
1 aa385 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-226] | HATPase_c[274-380]
- Domain count: 2
- Matched identifier: HKOC_2565000
- Positioned domains: HisKA 160-226 ; HATPase_c 274-380
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS12500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002560695
AssemblyASM256069v1 · Scaffoldhaploid
Genome composition6 159 094 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key