1 HAMP#1
156-228 aa · 73 aa · 15.7% of protein
Raw token
HAMP:156:0.0000000000176:228:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN302_RS10790
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002559875
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559875#CN302_RS10790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 466 aa (52.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-306 aa · 65 aa · 13.9% of protein
Raw token
HisKA:242:0.000000000000428:306:65:643 HATPase_c#3
357-464 aa · 108 aa · 23.2% of protein
Raw token
HATPase_c:357:7.85e-30:464:109:109- Raw architecture: HAMP:156:0.0000000000176:228:73:69#HisKA:242:0.000000000000428:306:65:64#HATPase_c:357:7.85e-30:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559875::NZ_NTQF01000023.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46444-48550Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN302_10795RefSeq proteinWP_097877554.1
Context group ID
GCF_002559875::NZ_NTQF01000023.1::G00022Context members
CN302_RS10785CN302_RS10790
Partner locus tags
CN302_RS10785CN302_RS10790
Partner old locus tags
CN302_10790CN302_10795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097877554.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6YFV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6YFV0_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN302_RS10790Primary locus identifier stored in the genes table.
Old locus tagCN302_10795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTQF01000023.1Sequence record reported by the local genomic context database.
Genomic interval47 150-48 550 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 444-48 550 ntGCF_002559875::NZ_NTQF01000023.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559875::NZ_NTQF01000023.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTQF01000023.1All displayed genes belong to this local TCS context.
Neighborhood span46 444-48 550 nt2 107 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 444 nt48 550 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN302_RS10785GCF_002559875#CN302_RS10785
RROmpR
46 444-47 160 nt · Forward (+)
CN302_RS10790GCF_002559875#CN302_RS10790
HKClassicCurrent focus
47 150-48 550 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552395#CON01_RS17450Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1763978
Simplified PFAM architecture for HKOC_1763978
PFAM domain coverage: 224 / 466 aa (48.1%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-229] | HisKA[242-306] | HATPase_c[356-463]
- Domain count: 3
- Matched identifier: HKOC_1763978
- Positioned domains: HAMP 179-229 ; HisKA 242-306 ; HATPase_c 356-463
Cluster members and taxonomy
Representative gene: GCF_002552395#CON01_RS17450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559875
AssemblyASM255987v1 · Scaffoldhaploid
Genome composition6 233 011 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 128 · HK 68 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key