1 HAMP#1
58-127 aa · 70 aa · 19.1% of protein
Raw token
HAMP:58:0.00000000000351:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN302_RS08295
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002559875
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559875#CN302_RS08295Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 366 aa (65.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 16.9% of protein
Raw token
HisKA:138:0.000000000000415:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.5% of protein
Raw token
HATPase_c:251:7.86e-22:358:109:109- Raw architecture: HAMP:58:0.00000000000351:127:70:69#HisKA:138:0.000000000000415:199:62:64#HATPase_c:251:7.86e-22:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559875::NZ_NTQF01000016.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span147487-149251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN302_08300RefSeq proteinWP_170954600.1
Context group ID
GCF_002559875::NZ_NTQF01000016.1::G00013Context members
CN302_RS08295CN302_RS08300
Partner locus tags
CN302_RS08295CN302_RS08300
Partner old locus tags
CN302_08300CN302_08305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_170954600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN302_RS08295Primary locus identifier stored in the genes table.
Old locus tagCN302_08300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTQF01000016.1Sequence record reported by the local genomic context database.
Genomic interval147 487-148 587 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span147 487-149 251 ntGCF_002559875::NZ_NTQF01000016.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559875::NZ_NTQF01000016.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTQF01000016.1All displayed genes belong to this local TCS context.
Neighborhood span147 487-149 251 nt1 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 487 nt149 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN302_RS08295GCF_002559875#CN302_RS08295
HKClassicCurrent focus
147 487-148 587 nt · Reverse (-)
CN302_RS08300GCF_002559875#CN302_RS08300
RROmpR
148 553-149 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001635915#WR47_RS09145Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712811
Simplified PFAM architecture for HKOC_2712811
PFAM domain coverage: 225 / 366 aa (61.5%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-127] | HisKA[138-200] | HATPase_c[251-359]
- Domain count: 3
- Matched identifier: HKOC_2712811
- Positioned domains: HAMP 75-127 ; HisKA 138-200 ; HATPase_c 251-359
Cluster members and taxonomy
Representative gene: GCF_001635915#WR47_RS09145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559875
AssemblyASM255987v1 · Scaffoldhaploid
Genome composition6 233 011 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 128 · HK 68 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key